Strain Passport - Bacillus velezensis

1. Taxonomy

Taxonomy
Domain Bacteria
Phylum Firmicutes
Class Bacilli
Order Bacillales
Family Bacillaceae
Genus Bacillus
Species Bacillus velezensis

2. Assembly Statistics

Assembly Statistics
MAGID MAG09
Size (bp) 3530016
N.contigs 171
GC (%) 47
N50 (bp) 34459
Coding Density 87.4
N.CDSs 3403
Genome Completeness
Completeness 97.71
Contamination 0.01
Strain heterogeneity 0.00

3. Metabolism and Function (KEGG)

KEGG Function Annotation

Bacillus velezensis KEGG Functional Classification

KEGG Resistome

name Type Level1 Level2 Description KO
ko01504 Gene variants Tetracycline resistance genes Transporters K18218 tet35; tetracycline resistance efflux pump K18218
ko01504 Gene variants Macrolide resistance genes Transporters K18231 msr, vmlR; macrolide transport system ATP-binding/permease protein K18231
ko01504 Gene variants Macrolide resistance genes Transporters K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein K08217
ko01504 Gene sets beta-Lactam resistance modules beta-Lactam resistance, Bla system [MD:M00627] K17836 penP; beta-lactamase class A [EC:3.5.2.6] K17836
ko01504 Gene sets Vancomycin resistance modules Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] K07260
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03367 dltA; D-alanine–poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] K03367
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03739 dltB; membrane protein involved in D-alanine export K03739
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K14188 dltC; D-alanine–poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] K14188
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] K03740 dltD; D-alanine transfer protein K03740
ko01504 Gene sets CAMP resistance modules Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] K14205
ko01504 Gene sets Multipdrug resistance modules Multidrug resistance, efflux pump AbcA [MD:M00700] K18104 abcA, bmrA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] K18104

KEGG Toxins

name Type Level1 Level2 Description KO
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K03699 tlyC; magnesium and cobalt exporter, CNNM family tlyC; magnesium and cobalt exporter, CNNM family K03699
ko02042 Type II toxins: Membrane damaging toxins Pore-forming toxins, Other K11068 hlyIII; hemolysin III hlyIII; hemolysin III K11068

KEGG Bacterial Virulence

GeneID KO Description PFAM
MAG09_HGOJGE_01335 K03596 GTP-binding protein LepA GTP-binding protein LepA C-terminus [PF06421.15]…
MAG09_HGOJGE_02910 K08303 U32 family peptidase [EC:3.4.-.-] Peptidase family U32 [PF01136.22]…
MAG09_HGOJGE_03385 K14956 6 kDa early secretory antigenic target Proteins of 100 residues with WXG [PF06013.15]…

Carbon Metabolism

Nitrogen Metabolism

4. Expert systems

AMRFinderPlus Antimicrobial Resistance

AMRFinderPlus
locus pscc.product gene_family class subclass
HGOJGE_15665 Beta-lactamase bla BETA-LACTAM BETA-LACTAM
HGOJGE_16220 Metallo-beta-lactamase type 2 bla BETA-LACTAM BETA-LACTAM

Virulence factors (VFDB)

## No VFDB data

5. BacDive

BacDive
Species Bacillus velezensis
ncbi_taxid 492670
taxid_matching_level species
type_strain no
medium_name R2A MEDIUM (DSMZ Medium 830)
medium_link NA
strain_history NA
gram positive
length 2.5 µm
width 0.5 µm
motility yes
oxygen_tolerance aerobe
spore yes
aggregation_score aggregates in chains
GC_content 45.0
antibiotic_resistance_chebi NA
antibiotic_resistance_metabolite NA

6. Publications

7. U.S. Patents

First 1 patents out of 1

patent_number patent_title
8404476 Pure culture of strain AH2 of the Bacillus velezensis species and a product for the biological control of phytopathogenic fungi