Strain Passport - Bacillus velezensis
1. Taxonomy
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Taxonomy
|
|
|---|---|
| Domain | Bacteria |
| Phylum | Firmicutes |
| Class | Bacilli |
| Order | Bacillales |
| Family | Bacillaceae |
| Genus | Bacillus |
| Species | Bacillus velezensis |
2. Assembly Statistics
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Assembly Statistics
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|
|---|---|
| MAGID | MAG09 |
| Size (bp) | 3530016 |
| N.contigs | 171 |
| GC (%) | 47 |
| N50 (bp) | 34459 |
| Coding Density | 87.4 |
| N.CDSs | 3403 |
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Genome Completeness
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|
|---|---|
| Completeness | 97.71 |
| Contamination | 0.01 |
| Strain heterogeneity | 0.00 |
3. Metabolism and Function (KEGG)
KEGG Function Annotation
Bacillus velezensis KEGG Functional Classification
KEGG Resistome
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko01504 | Gene variants | Tetracycline resistance genes | Transporters | K18218 tet35; tetracycline resistance efflux pump | K18218 |
| ko01504 | Gene variants | Macrolide resistance genes | Transporters | K18231 msr, vmlR; macrolide transport system ATP-binding/permease protein | K18231 |
| ko01504 | Gene variants | Macrolide resistance genes | Transporters | K08217 mef; MFS transporter, DHA3 family, macrolide efflux protein | K08217 |
| ko01504 | Gene sets | beta-Lactam resistance modules | beta-Lactam resistance, Bla system [MD:M00627] | K17836 penP; beta-lactamase class A [EC:3.5.2.6] | K17836 |
| ko01504 | Gene sets | Vancomycin resistance modules | Vancomycin resistance, D-Ala-D-Lac type [MD:M00651] | K07260 vanY; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14] | K07260 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K03367 dltA; D-alanine–poly(phosphoribitol) ligase subunit 1 [EC:6.1.1.13] | K03367 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K03739 dltB; membrane protein involved in D-alanine export | K03739 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K14188 dltC; D-alanine–poly(phosphoribitol) ligase subunit 2 [EC:6.1.1.13] | K14188 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, dltABCD operon [MD:M00725] | K03740 dltD; D-alanine transfer protein | K03740 |
| ko01504 | Gene sets | CAMP resistance modules | Cationic antimicrobial peptide (CAMP) resistance, lysyl-phosphatidylglycerol (L-PG) synthase MprF [MD:M00726] | K14205 mprF, fmtC; phosphatidylglycerol lysyltransferase [EC:2.3.2.3] | K14205 |
| ko01504 | Gene sets | Multipdrug resistance modules | Multidrug resistance, efflux pump AbcA [MD:M00700] | K18104 abcA, bmrA; ATP-binding cassette, subfamily B, bacterial AbcA/BmrA [EC:7.6.2.2] | K18104 |
KEGG Toxins
| name | Type | Level1 | Level2 | Description | KO |
|---|---|---|---|---|---|
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K03699 tlyC; magnesium and cobalt exporter, CNNM family | tlyC; magnesium and cobalt exporter, CNNM family | K03699 |
| ko02042 | Type II toxins: Membrane damaging toxins | Pore-forming toxins, Other | K11068 hlyIII; hemolysin III | hlyIII; hemolysin III | K11068 |
KEGG Bacterial Virulence
| GeneID | KO | Description | PFAM |
|---|---|---|---|
| MAG09_HGOJGE_01335 | K03596 | GTP-binding protein LepA | GTP-binding protein LepA C-terminus [PF06421.15]… |
| MAG09_HGOJGE_02910 | K08303 | U32 family peptidase [EC:3.4.-.-] | Peptidase family U32 [PF01136.22]… |
| MAG09_HGOJGE_03385 | K14956 | 6 kDa early secretory antigenic target | Proteins of 100 residues with WXG [PF06013.15]… |
Carbon Metabolism
Nitrogen Metabolism
4. Expert systems
AMRFinderPlus Antimicrobial Resistance
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AMRFinderPlus
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|---|---|---|---|---|
| locus | pscc.product | gene_family | class | subclass |
| HGOJGE_15665 | Beta-lactamase | bla | BETA-LACTAM | BETA-LACTAM |
| HGOJGE_16220 | Metallo-beta-lactamase type 2 | bla | BETA-LACTAM | BETA-LACTAM |
Virulence factors (VFDB)
## No VFDB data5. BacDive
|
BacDive
|
|
|---|---|
| Species | Bacillus velezensis |
| ncbi_taxid | 492670 |
| taxid_matching_level | species |
| type_strain | no |
| medium_name | R2A MEDIUM (DSMZ Medium 830) |
| medium_link | NA |
| strain_history | NA |
| gram | positive |
| length | 2.5 µm |
| width | 0.5 µm |
| motility | yes |
| oxygen_tolerance | aerobe |
| spore | yes |
| aggregation_score | aggregates in chains |
| GC_content | 45.0 |
| antibiotic_resistance_chebi | NA |
| antibiotic_resistance_metabolite | NA |
6. Publications
7. U.S. Patents
First 1 patents out of 1
| patent_number | patent_title |
|---|---|
| 8404476 | Pure culture of strain AH2 of the Bacillus velezensis species and a product for the biological control of phytopathogenic fungi |